Download MendeleyGH47 and Cyclosulfamidate
Males, A., Davies, G.J., Artola, M., Overkleeft, H.S.To be published.
8B5M
Crystal structure of GH47 alpha-1,2-mannosidase from Caulobacter K31 strain in complex with cyclosulfamidate inhibitor
- PDB DOI: https://doi.org/10.2210/pdb8B5M/pdb
- Classification: HYDROLASE
- Organism(s): Caulobacter
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-09-23 Released: 2023-10-04
- Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.97 ?
- R-Value Free: 0.148
- R-Value Work: 0.137
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mannosyl-oligosaccharide 1,2-alpha-mannosidase | 447 | Caulobacter | Mutation(s): 0 Gene Names: Caul_4035 EC: 3.2.1.113 |  | |
UniProt | |||||
Find proteins for B0SWV2 (Caulobacter sp. (strain K31)) Explore B0SWV2 Go to UniProtKB: B0SWV2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B0SWV2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5OV (Subject of Investigation/LOI) Query on 5OV | B [auth A] | (3aR,4S,5S,6R,7R,7aS)-7-(hydroxymethyl)-2,2-bis(oxidanylidene)-3a,4,5,6,7,7a-hexahydro-3H-benzo[d][1,2,3]oxathiazole-4,5,6-triol C7 H13 N O7 S LDXSPHJOJCEWFB-MAFUWASYSA-N |  | ||
| CA Query on CA | D [auth A], E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.97 ?
- R-Value Free: 0.148
- R-Value Work: 0.137
- Space Group: H 3
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 144.134 | ¦Á = 90 |
| b = 144.134 | ¦Â = 90 |
| c = 50.32 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DIALS | data reduction |
| Aimless | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-10-04 Deposition Author(s): Males, A., Davies, G.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/T004819/1 |
Revision History (Full details and data files)
- Version 1.0: 2023-10-04
Type: Initial release
