Download MendeleyStructure of the Interfilum paradoxum LFY DNA-binding domain bound to DNA
Verhage, L., Zubieta, C., Nanao, M.H.To be published.
8S8Q | pdb_00008s8q
Structure of the Interfilum paradoxum LFY DNA-binding domain bound to DNA
- PDB DOI: https://doi.org/10.2210/pdb8S8Q/pdb
- NAKB: 8S8Q
- Classification: DNA BINDING PROTEIN
- Organism(s): Interfilum paradoxum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-03-07 Released: 2025-03-19
- Funding Organization(s): Agence Nationale de la Recherche (ANR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 ?
- R-Value Free: 0.237 (Depositor), 0.238 (DCC)
- R-Value Work: 0.194 (Depositor), 0.198 (DCC)
- R-Value Observed: 0.196 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Floricaula/leafy-like transcription factor | A, C [auth B] | 162 | Interfilum paradoxum | Mutation(s): 0 Gene Names: KFL_007730030 |  |
UniProt | |||||
Find proteins for A0A1Y1IRK2 (Klebsormidium nitens) Explore A0A1Y1IRK2 Go to UniProtKB: A0A1Y1IRK2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1Y1IRK2 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(P*GP*GP*TP*GP*CP*AP*GP*CP*GP*AP*CP*CP*GP*GP*TP*AP*GP*CP*AP*AP*CP*GP*CP*A)-3') | B [auth D] | 24 | Interfilum paradoxum |  | |
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(P*TP*GP*CP*GP*TP*TP*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*GP*CP*TP*GP*CP*AP*CP*T)-3') | D [auth C] | 24 | Interfilum paradoxum |  | |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 ?
- R-Value Free: 0.237 (Depositor), 0.238 (DCC)
- R-Value Work: 0.194 (Depositor), 0.198 (DCC)
- R-Value Observed: 0.196 (Depositor)
Space Group: P 61
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 144.89 | ¦Á = 90 |
| b = 144.89 | ¦Â = 90 |
| c = 69.836 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XSCALE | data scaling |
| XDS | data reduction |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-03-19 Deposition Author(s): Verhage, L., Zubieta, C., Nanao, M.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Agence Nationale de la Recherche (ANR) | France | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-03-19
Type: Initial release
