Download MendeleyCrystal structure of major pilin PilB from Streptococcus sanguinis - SeMet derivative
Yadav, S., Parijat, P., Krishnan, V.To be published.
8WG6 | pdb_00008wg6
Crystal structure of major pilin PilB from Streptococcus sanguinis - SeMet derivative
- PDB DOI: https://doi.org/10.2210/pdb8WG6/pdb
- Classification: CELL ADHESION
- Organism(s): Streptococcus sanguinis SK36
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2023-09-20 Released: 2025-03-26
- Funding Organization(s): Science and Engineering Research Board (SERB)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.269 (Depositor), 0.280 (DCC)
- R-Value Work: 0.226 (Depositor), 0.238 (DCC)
- R-Value Observed: 0.228 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FimA fimbrial subunit-like protein, putative | 451 | Streptococcus sanguinis SK36 | Mutation(s): 0 Gene Names: SSA_1633 |  | |
UniProt | |||||
Find proteins for A3CPB6 (Streptococcus sanguinis (strain SK36)) Explore A3CPB6 Go to UniProtKB: A3CPB6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A3CPB6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | C [auth A], D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| NA Query on NA | E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.269 (Depositor), 0.280 (DCC)
- R-Value Work: 0.226 (Depositor), 0.238 (DCC)
- R-Value Observed: 0.228 (Depositor)
Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 37.78 | ¦Á = 90 |
| b = 58.772 | ¦Â = 90 |
| c = 214.108 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| CRANK2 | phasing |
| Coot | model building |
| REFMAC | refinement |
| autoPROC | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-03-26 Deposition Author(s): Yadav, S., Parijat, P., Krishnan, V.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Science and Engineering Research Board (SERB) | India | CRG/2019/000432 |
Revision History (Full details and data files)
- Version 1.0: 2025-03-26
Type: Initial release
