8YN0

Deposited: 2024-03-10 Released: 2024-12-11
Deposition Author(s): Huang, S., Xiao, Y., Chai, J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Huang, S., Xiao, Y., Chai, J.

To be published.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein EDS1	A [auth B], E [auth A]	617	Arabidopsis thaliana	Mutation(s): 0 Gene Names: EDS1, EDS1-90, EDS1A, At3g48090, T17F15.40
UniProt
Find proteins for Q9SU72 (Arabidopsis thaliana) Explore Q9SU72 Go to UniProtKB: Q9SU72
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9SU72
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Senescence-associated carboxylesterase 101	B [auth E], C	536	Arabidopsis thaliana	Mutation(s): 0 Gene Names: SAG101, At5g14930, F2G14.50 EC: 3.1.1.1
UniProt
Find proteins for Q4F883 (Arabidopsis thaliana) Explore Q4F883 Go to UniProtKB: Q4F883
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q4F883
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable disease resistance protein At5g66890	D [auth H], F [auth D]	415	Arabidopsis thaliana	Mutation(s): 0 Gene Names: At5g66890, MUD21.15
UniProt
Find proteins for Q9FKZ2 (Arabidopsis thaliana) Explore Q9FKZ2 Go to UniProtKB: Q9FKZ2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9FKZ2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
APR (Subject of Investigation/LOI) Query on APR Download Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain J [auth A] MOL2 format, chain G [auth B] MOL2 format, chain J [auth A] mmCIF format, chain G [auth B] mmCIF format, chain J [auth A]	G [auth B], J [auth A]	ADENOSINE-5-DIPHOSPHORIBOSE C₁₅ H₂₃ N₅ O₁₄ P₂ SRNWOUGRCWSEMX-KEOHHSTQSA-N		Interactions Focus chain G [auth B] Focus chain J [auth A] Interactions & Density Focus chain G [auth B] Focus chain J [auth A]
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain H [auth E] SDF format, chain I [auth C] MOL2 format, chain H [auth E] MOL2 format, chain I [auth C] mmCIF format, chain H [auth E] mmCIF format, chain I [auth C]	H [auth E], I [auth C]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain H [auth E] Focus chain I [auth C] Interactions & Density Focus chain H [auth E] Focus chain I [auth C]