Download MendeleyCryo-EM structure of the Cas9d-sgRNA complex
Li, X., Zhang, H., Liu, Z.To be published.
8ZQ9
Cryo-EM structure of the Cas9d-sgRNA complex
- PDB DOI: https://doi.org/10.2210/pdb8ZQ9/pdb
- NAKB: 8ZQ9
- EM Map EMD-60379: EMDB EMDataResource
- Classification: ANTIVIRAL PROTEIN
- Organism(s): metagenome
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-06-01 Released: 2025-02-05
- Funding Organization(s): Other government
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.87 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| a protein | 747 | metagenome | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A3B9V9Z8 (Deltaproteobacteria bacterium) Explore A0A3B9V9Z8 Go to UniProtKB: A0A3B9V9Z8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A3B9V9Z8 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| RNA (128-MER) | 159 | metagenome |  | ||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.87 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other government | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-02-05
Type: Initial release
