Download MendeleyGlucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin and UDP2F glucose
Arold, S.T., Hameed, U.F.S.To be published.
9J9K
Glucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin and UDP2F glucose
- PDB DOI: https://doi.org/10.2210/pdb9J9K/pdb
- Entry: 9J9K supersedes: 8J2T
- Classification: TRANSFERASE
- Organism(s): Nicotiana benthamiana
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2024-08-22 Released: 2024-09-04
- Funding Organization(s): Other private
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.15 ?
- R-Value Free: 0.258
- R-Value Work: 0.190
- R-Value Observed: 0.193
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycosyltransferase | 475 | Nicotiana benthamiana | Mutation(s): 0 EC: 2.4.1 |  | |
UniProt | |||||
Find proteins for A0A8K1ZRH3 (Nicotiana benthamiana) Explore A0A8K1ZRH3 Go to UniProtKB: A0A8K1ZRH3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8K1ZRH3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| U2F (Subject of Investigation/LOI) Query on U2F | D [auth A], F [auth B] | URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE C15 H23 F N2 O16 P2 NGTCPFGWXMBZEP-NQQHDEILSA-N |  | ||
| T83 (Subject of Investigation/LOI) Query on T83 | C [auth A], E [auth B] | 7-hydroxy-6-methoxy-2H-1-benzopyran-2-one C10 H8 O4 RODXRVNMMDRFIK-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.15 ?
- R-Value Free: 0.258
- R-Value Work: 0.190
- R-Value Observed: 0.193
- Space Group: I 1 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 101.607 | ¦Á = 90 |
| b = 114.919 | ¦Â = 103.12 |
| c = 104.249 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-09-04 Deposition Author(s): Arold, S.T., Hameed, U.F.S.
- This entry supersedes: 8J2T
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other private | Saudi Arabia | King Abdullah University of Science and Technology |
Revision History (Full details and data files)
- Version 1.0: 2024-09-04
Type: Initial release
