9U7V | pdb_00009u7v

The X-ray Crystallographic Structure of oligo-1,6-glucosidase from Paenibacillus sp. STB16

PDB DOI: https://doi.org/10.2210/pdb9U7V/pdb

Classification: HYDROLASE
Organism(s): Paenibacillus
Expression System: Bacillus subtilis
Mutation(s): No

Deposited: 2025-03-25 Released: 2025-05-07
Deposition Author(s): Li, Z.F., Tian, Y.X., Zhang, J.S., Ban, X.F.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.24 ?
R-Value Free:
0.350 (Depositor), 0.350 (DCC)
R-Value Work:
0.305 (Depositor), 0.311 (DCC)
R-Value Observed:
0.307 (Depositor)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The X-ray Crystallographic Structure of oligo-1,6-glucosidase from Paenibacillus sp. STB16

Li, Z.F., Tian, Y.X., Zhang, J.S., Ban, X.F.

To be published.

Macromolecule Content

Total Structure Weight: 134.25 kDa
Atom Count: 8,992
Modelled Residue Count: 1,090
Deposited Residue Count: 1,154
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
oligo-1,6-glucosidase	A, B	577	Paenibacillus	Mutation(s): 0 Gene Names: malL, BN871_GC_00040 EC: 3.2.1.10
UniProt
Find proteins for W8YZE1 (Paenibacillus sp. P22) Explore W8YZE1 Go to UniProtKB: W8YZE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	W8YZE1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.24 ?
R-Value Free: 0.350 (Depositor), 0.350 (DCC)
R-Value Work: 0.305 (Depositor), 0.311 (DCC)
R-Value Observed: 0.307 (Depositor)

Space Group: P 4 2₁ 2

Unit Cell:

Length ( ? )	Angle ( ? )
a = 154.57	α = 90
b = 154.57	β = 90
c = 115.174	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-05-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32472281

Revision History (Full details and data files)

Version 1.0: 2025-05-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.