Education Corner: Python Scripting for Biochemistry & Molecular Biology

06/21 

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The Spring 2022 issue of the RCSB PDB Newsletter is now online.

In the Education Corner, Paul Craig (RIT) and Jessica Nash (MolSSI) describe their virtual workshop on Python Scripting for Biochemistry and Molecular Biology hosted by the IQB (Institute for Quantitative Biomedicine) at Rutgers University. . The course materials are available for download and viewing on YouTube.

Other articles in this issue highlights Announcements for Developers; New Structure Annotations; Award-winning PDB-101 images; and more.

News Index

• 12/31 Molecular Landscapes for 2023

• 12/22 Season's Greetings

• 12/20 Celebrate #NationalCrosswordDay with Sequence Events

• 12/18 Using KBase to access PDB Structures and CSMs

• 12/15 Guide to Understanding PDB Data: Hierarchical Structure

• 12/15 wwPDB News: PDB Certified as a Global Core Biodata Resource

• 12/13 Find Similarly-Shaped Structures with Advanced Search

• 12/13 Exploring the Structural Biology of Cancer

• 12/08 Structural Biology and Nobel Prizes

• 12/06 Molecular Origami: Green and Red Fluorescent Proteins

• 12/04 Explore Multiple Sequence Alignments in 1D and 3D

• 11/30 Video: How Neurons Communicate

• 11/29 Ligand Expo: Scheduled downtime and request for feedback

• 11/22 Keeping Up with RCSB PDB News

• 11/21 Molecular Landscapes

• 11/15 Education Corner: Animating Photosynthesis

• 11/07 Meet RCSB PDB at ABRCMS

• 11/04 New Coloring Page: Clathrin-coated Pit

• 11/01 Molecular Landscapes

• 11/01 wwPDB News: Deprecation of FTP File Download Protocol in the PDB Archive

• 10/25 Meet RCSB PDB at SACNAS

• 10/21 Register Now for Virtual Crash Course: Using KBase to access PDB Structures and CSMs

• 10/19 Happy Birthday, PDB!

• 10/17 Remembering John Westbrook on the Anniversary of His Passing

• 10/16 Happy Birthday, Irving Geis

• 10/13 Education Corner: Inktober SciArt

• 10/12 wwPDB News: wwPDB Charter: Full and Associate Members

• 10/10 Fall Newsletter Published

• 10/07 Undergrads/Grads: Apply to the Molecule of the Month Boot Camp (January 2023)

• 10/01 Structural Biology and Nobel Prizes

• 09/27 Molecular Origami: Build a 3D paper model of DNA

• 09/26 wwPDB News: Improved EM validation with Q-score

• 09/20 View Crystal Structure Quality in 3D

• 09/13 Simple Sequence Searching

• 09/07 Register Now for Virtual Crash Course: Exploring Computed Structure Models from Artificial Intelligence/Machine Learning at RCSB.org

• 09/05 wwPDB News: Future Planning: PDB entries with extended CCD or PDB IDs will be distributed in the PDBx/mmCIF format only

• 08/31 Explore Computed Structure Models Alongside PDB Data

• 08/29 Education Corner: Bound! Protein-Drug Card Game

• 08/23 Molecular Landscapes: E. coli

• 08/22 DNS name changes for PDB archive downloads from RCSB PDB

• 08/16 Chemical Sketch Tool

• 08/09 Poster Prize Awarded at ACA

• 08/01 Congratulations to David S. Goodsell

• 07/31 New Coloring Page

• 07/26 Meet the RCSB PDB at ACA

• 07/25 wwPDB News: Improved EM validation with Q-score

• 07/19 Poster Prize Awarded at ISMB

• 07/12 Summer Newsletter Published

• 07/12 New Position: Senior Front-end Web Developer

• 07/10 Meet the RCSB PDB at ISMB

• 07/08 Congratulations to David S. Goodsell

• 07/05 Meet the RCSB PDB at The Protein Society

• 06/28 wwPDB News: New Publication: PDBx/mmCIF Ecosystem

• 06/21 Education Corner: Python Scripting for Biochemistry & Molecular Biology

• 06/20 Developers: Switch to Search API v2 Before July 13

• 06/14 Learn to Use Mol* for 3D Visualization

• 06/06 PDB Data Distributions

• 06/06 New Flyer: Poxviruses

• 06/01 Play the Bound! Protein-Drug Card Game

• 05/24 Watch PDB50 Celebrations

• 05/23 Subscribe to API News

• 05/17 Award-Winning Videos on Molecular Mechanisms of Cancer

• 05/16 Postdocs and Scientific Software Developers

• 05/10 Curated Files for 3D Printing

• 05/09 New Ways to Explore Similar Proteins

• 05/03 wwPDB News: Distributing PDBx/mmCIF-Formatted Assembly Files

• 05/03 Vote Now for the Viewer's Choice Award

• 04/26 New Access to the PDB archive

• 04/25 Explore Ligand Quality

• 04/22 Videos of Experimental Methods

• 04/19 Access Membrane Protein Annotations

• 04/19 Spring Newsletter Published

• 04/15 High School Students: Submit Videos By April 25

• 04/13 Search API v2 Now Available

• 04/12 Paper Published: Evolution of the SARS-CoV-2 proteome in 3D

• 04/04 Developers: Switch to New Sequence Cluster Files by April 12

• 03/31 New Coloring Pages

• 03/28 Meet RCSB PDB at ASBMB

• 03/25 CASP15 Call for Targets

• 03/24 Annual Report Published

• 03/22 Intrinsically Disordered Biological Macromolecules in Cellular Signaling/Regulation

• 03/18 wwPDB News: ModelCIF Extension for Computed Structure Models

• 03/17 Video: Opioids and Pain Signaling

• 03/16 Announcement: Search API v2 will be released April 13

• 03/15 Brain Awareness Week

• 03/15 Explore Antibody Annotations

• 03/14 Award-Winning Images

• 03/08 Streamline Search Results

• 03/08 Register for Exploring Structural Database Use in Crystallography

• 03/01 Search for Structures or Feature Help, News, and PDB-101

• 03/01 Molecular Landscapes in The New Yorker

• 02/25 wwPDB News: Deposition of Half-maps for Certain EM Entries Now Mandatory

• 02/22 Improved Access to Chemical Component Definitions

• 02/22 Molecule of the Month Newsletter

• 02/15 Molecular Landscapes

• 02/11 Developers: Switch to New Sequence Cluster Files by April 12

• 02/11 Molecular Valentines

• 02/08 Education Corner: Inktober SciArt

• 02/08 Distributing PDBx/mmCIF-Formatted Assembly Files

• 02/01 Browse and Explore ECOD Annotations

• 02/01 Register Now for Crash Course: Python Scripting for Biochemistry & Molecular Biology

• 01/25 MyPDB: Keep up-to-date with New Structures

• 01/25 New Publications in Protein Science

• 01/18 wwPDB News: Improved support for extended PDBx/mmCIF structure factor files

• 01/18 New Publication in Structure

• 01/12 Winter Newsletter Published

• 01/05 wwPDB News: Time-stamped Copies of PDB and EMDB Archives

• 01/01 2022: Revolutionizing Structural Biology with 3DEM