Download MendeleyThe crystal structure of the hypothetical protein vca0042 from Vibrio cholerae O1
Zhang, R., Zhou, M., Moy, S., Collart, F., Joachimiak, A.To be published.
1YLN
The Crystal Structure of the Protein of Unknown Function VCA0042 from Vibrio cholerae O1
- PDB DOI: https://doi.org/10.2210/pdb1YLN/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Vibrio cholerae O1
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2005-01-19 Released: 2005-03-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 ?
- R-Value Free: 0.243
- R-Value Work: 0.210
- R-Value Observed: 0.210
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical protein vca0042 | 252 | Vibrio cholerae O1 | Mutation(s): 1 Gene Names: GI:9657424 |  | |
UniProt | |||||
Find proteins for Q9KNC3 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KNC3 Go to UniProtKB: Q9KNC3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KNC3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| OSE Query on OSE | A | L-PEPTIDE LINKING | C3 H7 N O6 S |  | SER |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 ?
- R-Value Free: 0.243
- R-Value Work: 0.210
- R-Value Observed: 0.210
- Space Group: P 31 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 56.429 | ¦Á = 90 |
| b = 56.429 | ¦Â = 90 |
| c = 171.128 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2005-03-08 Deposition Author(s): Zhang, R., Zhou, M., Moy, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2005-03-08
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
