Download MendeleyCrystal Structure of S172Absshmt and its Complexes
Rajaram, V., Bhavani, B.S., Prakash, V., Appaji Rao, N., Savithri, H.S., Murthy, M.R.N.To be published.
2VIA
Crystal structure of S172AbsSHMT L-Serine external aldimine
- PDB DOI: https://doi.org/10.2210/pdb2VIA/pdb
- Classification: TRANSFERASE
- Organism(s): Geobacillus stearothermophilus
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2007-11-28 Released: 2007-12-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.67 ?
- R-Value Free: 0.209
- R-Value Work: 0.178
- R-Value Observed: 0.179
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SERINE HYDROXYMETHYLTRANSFERASE | 405 | Geobacillus stearothermophilus | Mutation(s): 1 EC: 2.1.2.1 |  | |
UniProt | |||||
Find proteins for Q7SIB6 (Geobacillus stearothermophilus) Explore Q7SIB6 Go to UniProtKB: Q7SIB6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7SIB6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | C [auth A] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| MPD Query on MPD | D [auth A], E [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| SER Query on SER | B [auth A] | SERINE C3 H7 N O3 MTCFGRXMJLQNBG-REOHCLBHSA-N |  | ||
| PO4 Query on PO4 | F [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.67 ?
- R-Value Free: 0.209
- R-Value Work: 0.178
- R-Value Observed: 0.179
- Space Group: P 21 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 60.986 | ¦Á = 90 |
| b = 106.283 | ¦Â = 90 |
| c = 57.076 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2007-12-18 Deposition Author(s): Rajaram, V., Bhavani, B.S., Prakash, V., Appaji Rao, N., Savithri, H.S., Murthy, M.R.N.
Revision History (Full details and data files)
- Version 1.0: 2007-12-18
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
