Download MendeleySpecific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
Bhatt, V.S., Guan, W., Wang, P.G.To be published.
3RU9
Specific recognition of N-acetylated substrates and domain flexibility in WbgU: a UDP-GalNAc 4-epimerase
- PDB DOI: https://doi.org/10.2210/pdb3RU9/pdb
- Classification: ISOMERASE
- Organism(s): Plesiomonas shigelloides
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-05-04 Released: 2011-05-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.21 ?
- R-Value Free: 0.232 (Depositor), 0.230 (DCC)
- R-Value Work: 0.181 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.183 (Depositor)
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| WbgU | 351 | Plesiomonas shigelloides | Mutation(s): 0 Gene Names: wbgU EC: 5.1.3.7 |  | |
UniProt | |||||
Find proteins for Q7BJX9 (Plesiomonas shigelloides) Explore Q7BJX9 Go to UniProtKB: Q7BJX9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7BJX9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | E [auth A], I [auth B], L [auth C], O [auth D] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| SO4 Query on SO4 | F [auth A], H [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GLY Query on GLY | K [auth C], N [auth D] | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N |  | ||
| UNL Query on UNL | G [auth A], J [auth B], M [auth C], P [auth D] | Unknown ligand DHMQDGOQFOQNFH-UHFFFAOYSA-N | |||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.21 ?
- R-Value Free: 0.232 (Depositor), 0.230 (DCC)
- R-Value Work: 0.181 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.183 (Depositor)
Space Group: P 32
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 77.41 | α = 90 |
| b = 77.41 | β = 90 |
| c = 224.887 | γ = 120 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-05-25 Deposition Author(s): Bhatt, V.S., Guan, W., Wang, P.G.
Revision History (Full details and data files)
- Version 1.0: 2011-05-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-01-24
Changes: Database references, Structure summary - Version 1.3: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
