Download MendeleyCrystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine
Chen, T.J., Chien, W.T., Lin, C.C., Wang, W.C.To be published.
4HO2
Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine
- PDB DOI: https://doi.org/10.2210/pdb4HO2/pdb
- Classification: TRANSFERASE
- Organism(s): Aneurinibacillus thermoaerophilus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-10-22 Released: 2013-10-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 ?
- R-Value Free: 0.232
- R-Value Work: 0.193
- R-Value Observed: 0.195
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glucose-1-phosphate thymidylyltransferase | 297 | Aneurinibacillus thermoaerophilus | Mutation(s): 0 Gene Names: rmlA EC: 2.7.7.24 |  | |
UniProt | |||||
Find proteins for Q9AGY4 (Aneurinibacillus thermoaerophilus) Explore Q9AGY4 Go to UniProtKB: Q9AGY4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9AGY4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| THM Query on THM | B [auth A], C [auth A] | THYMIDINE C10 H14 N2 O5 IQFYYKKMVGJFEH-XLPZGREQSA-N |  | ||
| SO4 Query on SO4 | D [auth A], E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 ?
- R-Value Free: 0.232
- R-Value Work: 0.193
- R-Value Observed: 0.195
- Space Group: P 42 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 91.895 | ¦Á = 90 |
| b = 91.895 | ¦Â = 90 |
| c = 70.134 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2013-10-23 Deposition Author(s): Chen, T.J., Chien, W.T., Lin, C.C., Wang, W.C.
Revision History (Full details and data files)
- Version 1.0: 2013-10-23
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
