Download MendeleyUbch5b-RING3 fusion structure
Cao, R., Blacklow, S.C.To be published.
8V0D
Ubch5B-RING3 of MIB1 fusion structure
- PDB DOI: https://doi.org/10.2210/pdb8V0D/pdb
- Classification: LIGASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-11-17 Released: 2024-11-27
- Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.243
- R-Value Work: 0.213
- R-Value Observed: 0.214
Starting Model: in silico
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubch5B-RING3 of MIB1 fusion protein | A [auth B], B [auth A] | 237 | Homo sapiens | Mutation(s): 0 Gene Names: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B, MIB1, DIP1, KIAA1323, ZZANK2 EC: 2.3.2.23 (PDB Primary Data), 2.3.2.24 (PDB Primary Data), 2.3.2.27 (PDB Primary Data) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62837 (Homo sapiens) Explore P62837 Go to UniProtKB: P62837 | |||||
PHAROS: P62837 GTEx: ENSG00000131508 | |||||
Find proteins for Q86YT6 (Homo sapiens) Explore Q86YT6 Go to UniProtKB: Q86YT6 | |||||
PHAROS: Q86YT6 GTEx: ENSG00000101752 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | Q86YT6P62837 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN (Subject of Investigation/LOI) Query on ZN | C [auth B], D [auth B], E [auth A], F [auth A], G [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.243
- R-Value Work: 0.213
- R-Value Observed: 0.214
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 28.985 | ¦Á = 90 |
| b = 65.119 | ¦Â = 93.03 |
| c = 135.931 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| PHASER | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-11-27 Deposition Author(s): Cao, R., Blacklow, S.C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | R35 CA220340 |
Revision History (Full details and data files)
- Version 1.0: 2024-11-27
Type: Initial release
