Download MendeleyTOM20-driven E3 ligase recruitment regulates mitochondrial dynamics through PLD6
Raiff, A., Zhao, S., Bekturova, A., Zenge, C., Mazor, S., Chen, X., Ru, W., Makaros, Y., Ast, T., Ordureau, A., Xu, C., Koren, I.(2025) Nat Chem Biol
9LKX | pdb_00009lkx
local refinement of FEM1B bound with PLD6
- PDB DOI: https://doi.org/10.2210/pdb9LKX/pdb
- EM Map EMD-63187: EMDB EMDataResource
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2025-01-16 Released: 2025-04-09
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.76 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein fem-1 homolog B | A [auth J] | 627 | Homo sapiens | Mutation(s): 0 Gene Names: FEM1B, F1AA, KIAA0396 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UK73 (Homo sapiens) Explore Q9UK73 Go to UniProtKB: Q9UK73 | |||||
PHAROS: Q9UK73 GTEx: ENSG00000169018 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UK73 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mitochondrial cardiolipin hydrolase | B [auth K] | 204 | Homo sapiens | Mutation(s): 0 Gene Names: PLD6 EC: 3.1.4 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8N2A8 (Homo sapiens) Explore Q8N2A8 Go to UniProtKB: Q8N2A8 | |||||
PHAROS: Q8N2A8 GTEx: ENSG00000179598 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8N2A8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.76 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.20.1_4487: |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-04-09
Type: Initial release - Version 1.1: 2025-04-30
Changes: Data collection, Database references
