Download MendeleyThe specificity of RNA packaging in isometric RNA plant viruses is principally determined by replication
Saunders, K., Shah, S., Peyret, H., Meshcheriakova, Y., Richardson, J., Eltschkner, S., Lawson, D.M., Lomonossoff, G.To be published.
9QVE | pdb_00009qve
Satellite Tobacco Necrosis Virus-1
- PDB DOI: https://doi.org/10.2210/pdb9QVE/pdb
- EM Map EMD-53395: EMDB EMDataResource
- Classification: VIRUS LIKE PARTICLE
- Organism(s): Satellite tobacco necrosis virus 1
- Expression System: Nicotiana benthamiana
- Mutation(s): No
- Deposited: 2025-04-11 Released: 2025-05-07
- Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.77 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Capsid protein | 196 | Satellite tobacco necrosis virus 1 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P03606 (Satellite tobacco necrosis virus 1) Explore P03606 Go to UniProtKB: P03606 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03606 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG (Subject of Investigation/LOI) Query on MG | B [auth A], C [auth A], D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.77 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC | 4.5.3 |
| MODEL REFINEMENT | PHENIX | 1.21.2_5419: |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-05-07 Deposition Author(s): Saunders, K., Shah, S., Peyret, H., Meshcheriakova, Y., Richardson, J., Eltschkner, S., Lawson, D.M., Lomonossoff, G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/X01097X/1 |
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/Y005732/1 |
Revision History (Full details and data files)
- Version 1.0: 2025-05-07
Type: Initial release
