9GUT

30S mRNA delivery complex (bS1 resolved)

PDB DOI: https://doi.org/10.2210/pdb9GUT/pdb
EM Map EMD-51619: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Escherichia coli K-12, synthetic construct
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2024-09-20 Released: 2024-11-20
Deposition Author(s): Rahil, H., Weixlbaumer, A., Webster, M.W.
Funding Organization(s): European Research Council (ERC), Agence Nationale de la Recherche (ANR), European Molecular Biology Organization (EMBO), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Wellcome Trust

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Molecular basis of mRNA delivery to the bacterial ribosome

Webster, M.W., Chauvier, A., Rahil, H., Graziadei, A., Miropolskaya, N., Charles, K., Takacs, M., Saintandre, C., Rappsilber, J., Walter, N.G., Weixlbaumer, A.

(2024) Science

DOI: https://doi.org/10.1126/science.ado8476

Macromolecule Content

Total Structure Weight: 1,391.3 kDa
Atom Count: 58,183
Modelled Residue Count: 4,572
Deposited Residue Count: 6,307
Unique protein chains: 21
Unique nucleic acid chains: 3

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S1	B	557	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsA, ssyF, b0911, JW0894
UniProt
Find proteins for P0AG67 (Escherichia coli (strain K12)) Explore P0AG67 Go to UniProtKB: P0AG67
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AG67
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S2	C	241	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsB, b0169, JW0164
UniProt
Find proteins for P0A7V0 (Escherichia coli (strain K12)) Explore P0A7V0 Go to UniProtKB: P0A7V0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7V0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS3	D	233	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsC, A5U30_004548, A8502_004027, ACN81_25500, ACU57_20980, AW118_24880, AWP47_12665, B6R15_004073, B6R31_004972, BANRA_01945... rpsC, A5U30_004548, A8502_004027, ACN81_25500, ACU57_20980, AW118_24880, AWP47_12665, B6R15_004073, B6R31_004972, BANRA_01945, BANRA_04324, BCB93_004289, BE932_15515, BER14_25170, BG944_001129, BGM66_003597, BGZ_02594, BGZ_04121, BJI68_08695, BK292_20485, BK383_24665, BKL28_004547, BR158_003786, BTB68_004360, BTQ06_10670, BvCmsKKP061_03026, BvCmsSIP010_02681, BXT93_05495, C0P57_002664, C1Q91_004908, C2121_004166, C2M16_25425, C2R31_004629, C3F40_19740, C9Z68_22615, CF22_004853, CG704_20890, CIG67_10695, CQ842_14345, CQ842_22325, CTR35_003626, CV83915_02784, D3C88_13310, D3G36_23070, D4M65_20635, D4N09_20235, D9D43_22570, D9E49_05220, D9J61_16715, DD762_23610, DIV22_15195, DNQ45_03820, DNX30_25415, DS732_24325, DTL43_20935, DU321_12065, E2865_04467, E4K51_21555, E5H86_24460, E6D34_21695, EAI46_07540, ECs4179, EIA08_24020, EIZ93_12405, EN85_004353, EPS76_07150, EPS97_20030, EWK56_25060, ExPECSC038_03644, F7F11_22660, F7N46_23945, F9413_21170, F9461_25590, F9B07_24620, FGAF848_25890, FIJ20_21130, FJQ40_18370, FKO60_25700, FOI11_019195, FOI11_03985, FPI65_20370, FPS11_25365, FVB16_04935, FWK02_12630, FZU14_21885, G3V95_19910, G3W53_21020, G4A38_21575, G4A47_20845, G5603_24650, GAI89_24765, GAJ12_24655, GFY48_21635, GGB84_004455, GKF66_21610, GNW61_16695, GNZ05_25920, GOP25_22770, GP711_23370, GP954_00880, GP965_04360, GP975_01250, GP979_01940, GQA06_03885, GQE86_20145, GQM04_10630, GQM13_25265, GQM21_11295, GQN34_23330, GQW07_21485, GRO95_20750, GRW05_09125, GRW24_04690, GUC01_21245, H0O53_20765, H0O72_19480, HEP30_018700, HEP34_004758, HHH44_004523, HI055_004152, HIE29_005199, HJQ60_004999, HLX92_10010, HLZ50_22115, HMV95_19670, HMW38_23170, HV109_02125, HV209_14650, HVV39_09330, HVW04_17470, HVW43_18605, HVY77_02110, I6H00_20860, I6H02_12055, J0541_004409, J5U05_004075, JNP96_25370, NCTC10082_02827, NCTC10089_00490, NCTC10429_01082, NCTC10764_03851, NCTC10767_01504, NCTC10974_00537, NCTC11126_02758, NCTC11181_02726, NCTC11341_01901, NCTC7922_04054, NCTC7927_00539, NCTC7928_02529, NCTC8009_01498, NCTC8179_05929, NCTC8333_00477, NCTC8500_00322, NCTC8621_00496, NCTC8622_00518, NCTC8959_03273, NCTC8960_03058, NCTC9001_04242, NCTC9045_00553, NCTC9075_00712, NCTC9077_00592, NCTC9081_00905, NCTC9117_00744, NCTC9702_00525, NCTC9706_02725, NCTC9962_06785, OGM49_22395, P6223_003995, QDW62_02130, RZR61_12955, SAMEA3472112_00681, SAMEA3752557_01964, WR15_19670
UniProt
Find proteins for C3SQX2 (Escherichia coli) Explore C3SQX2 Go to UniProtKB: C3SQX2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C3SQX2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS4	E	206	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsD, BWG_2987
UniProt
Find proteins for C4ZUF1 (Escherichia coli (strain K12 / MC4100 / BW2952)) Explore C4ZUF1 Go to UniProtKB: C4ZUF1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C4ZUF1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S5	F	156	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsE, spc, b3303, JW3265
UniProt
Find proteins for P0A7W1 (Escherichia coli (strain K12)) Explore P0A7W1 Go to UniProtKB: P0A7W1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7W1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein bS6	G	131	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsF, BANRA_02890, BGM66_001638, BJI68_10200, C0P57_000210, CIG67_23060, CTR35_001516, CV83915_01828, E6D34_03615, G4A38_03220... rpsF, BANRA_02890, BGM66_001638, BJI68_10200, C0P57_000210, CIG67_23060, CTR35_001516, CV83915_01828, E6D34_03615, G4A38_03220, G4A47_10770, GNW61_00195, GQM21_23655, GRW05_28450, HVY77_22975, J0541_002297, JNP96_03175, NCTC8500_05020, NCTC9045_05184, NCTC9706_01764, P6223_000651, SAMEA3752557_01699
UniProt
Find proteins for W8T6F0 (Escherichia coli) Explore W8T6F0 Go to UniProtKB: W8T6F0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	W8T6F0
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S7	H	156	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsG, b3341, JW3303
UniProt
Find proteins for P02359 (Escherichia coli (strain K12)) Explore P02359 Go to UniProtKB: P02359
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P02359
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S8	I	130	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsH, b3306, JW3268
UniProt
Find proteins for P0A7W7 (Escherichia coli (strain K12)) Explore P0A7W7 Go to UniProtKB: P0A7W7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7W7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S9	J	130	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsI, b3230, JW3199
UniProt
Find proteins for P0A7X3 (Escherichia coli (strain K12)) Explore P0A7X3 Go to UniProtKB: P0A7X3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7X3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S10	K	103	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsJ, nusE, b3321, JW3283
UniProt
Find proteins for P0A7R5 (Escherichia coli (strain K12)) Explore P0A7R5 Go to UniProtKB: P0A7R5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7R5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S11	L	129	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsK, b3297, JW3259
UniProt
Find proteins for P0A7R9 (Escherichia coli (strain K12)) Explore P0A7R9 Go to UniProtKB: P0A7R9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7R9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S12	M	124	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsL, strA, b3342, JW3304
UniProt
Find proteins for P0A7S3 (Escherichia coli (strain K12)) Explore P0A7S3 Go to UniProtKB: P0A7S3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7S3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S13	N	118	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsM, b3298, JW3260
UniProt
Find proteins for P0A7S9 (Escherichia coli (strain K12)) Explore P0A7S9 Go to UniProtKB: P0A7S9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7S9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S14	O	101	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsN, b3307, JW3269
UniProt
Find proteins for P0AG59 (Escherichia coli (strain K12)) Explore P0AG59 Go to UniProtKB: P0AG59
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AG59
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS15	P	89	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsO, secC, b3165, JW3134
UniProt
Find proteins for P0ADZ4 (Escherichia coli (strain K12)) Explore P0ADZ4 Go to UniProtKB: P0ADZ4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0ADZ4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S16	Q	82	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsP, b2609, JW2590
UniProt
Find proteins for P0A7T3 (Escherichia coli (strain K12)) Explore P0A7T3 Go to UniProtKB: P0A7T3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7T3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S17	R	84	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsQ, neaA, b3311, JW3273
UniProt
Find proteins for P0AG63 (Escherichia coli (strain K12)) Explore P0AG63 Go to UniProtKB: P0AG63
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AG63
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S18	S	75	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsR, b4202, JW4160
UniProt
Find proteins for P0A7T7 (Escherichia coli (strain K12)) Explore P0A7T7 Go to UniProtKB: P0A7T7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7T7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S19	T	92	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsS, b3316, JW3278
UniProt
Find proteins for P0A7U3 (Escherichia coli (strain K12)) Explore P0A7U3 Go to UniProtKB: P0A7U3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7U3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S20	U	87	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsT, b0023, JW0022
UniProt
Find proteins for P0A7U7 (Escherichia coli (strain K12)) Explore P0A7U7 Go to UniProtKB: P0A7U7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A7U7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S21	V	71	Escherichia coli K-12	Mutation(s): 0 Gene Names: rpsU, b3065, JW3037
UniProt
Find proteins for P68679 (Escherichia coli (strain K12)) Explore P68679 Go to UniProtKB: P68679
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P68679
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Length	Organism	Image
16S ribosomal RNA	A	3,082	Escherichia coli K-12
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff) | 3D Structure

Entity ID: 23
Molecule	Chains	Length	Organism	Image
tRNA(fmet) P-site	W	77	Escherichia coli K-12
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff) | 3D Structure

Entity ID: 24
Molecule	Chains	Length	Organism	Image
mRNA	X	53	synthetic construct
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain AC [auth A] SDF format, chain AE [auth A] SDF format, chain AF [auth A] SDF format, chain BA [auth A] SDF format, chain BC [auth A] SDF format, chain BE [auth A] SDF format, chain BF [auth A] SDF format, chain CA [auth A] SDF format, chain CC [auth A] SDF format, chain CD [auth A] SDF format, chain CE [auth A] SDF format, chain CF [auth A] SDF format, chain DB [auth A] SDF format, chain DC [auth A] SDF format, chain DD [auth A] SDF format, chain DE [auth A] SDF format, chain DF [auth M] SDF format, chain EA [auth A] SDF format, chain EB [auth A] SDF format, chain EC [auth A] SDF format, chain EE [auth A] SDF format, chain EF [auth O] SDF format, chain FC [auth A] SDF format, chain FD [auth A] SDF format, chain GA [auth A] SDF format, chain GB [auth A] SDF format, chain GC [auth A] SDF format, chain GD [auth A] SDF format, chain GE [auth A] SDF format, chain HB [auth A] SDF format, chain HC [auth A] SDF format, chain HD [auth A] SDF format, chain HE [auth A] SDF format, chain IA [auth A] SDF format, chain IB [auth A] SDF format, chain IE [auth A] SDF format, chain JB [auth A] SDF format, chain JC [auth A] SDF format, chain JD [auth A] SDF format, chain JE [auth A] SDF format, chain KA [auth A] SDF format, chain KB [auth A] SDF format, chain KC [auth A] SDF format, chain KD [auth A] SDF format, chain KE [auth A] SDF format, chain LD [auth A] SDF format, chain LE [auth A] SDF format, chain MA [auth A] SDF format, chain MB [auth A] SDF format, chain MC [auth A] SDF format, chain ME [auth A] SDF format, chain NB [auth A] SDF format, chain NC [auth A] SDF format, chain OA [auth A] SDF format, chain OB [auth A] SDF format, chain OC [auth A] SDF format, chain OD [auth A] SDF format, chain OE [auth A] SDF format, chain PA [auth A] SDF format, chain PB [auth A] SDF format, chain PC [auth A] SDF format, chain PD [auth A] SDF format, chain QA [auth A] SDF format, chain QB [auth A] SDF format, chain QD [auth A] SDF format, chain QE [auth A] SDF format, chain RA [auth A] SDF format, chain RB [auth A] SDF format, chain RC [auth A] SDF format, chain RE [auth A] SDF format, chain SB [auth A] SDF format, chain SC [auth A] SDF format, chain TB [auth A] SDF format, chain TD [auth A] SDF format, chain TE [auth A] SDF format, chain UA [auth A] SDF format, chain UB [auth A] SDF format, chain UC [auth A] SDF format, chain UD [auth A] SDF format, chain VA [auth A] SDF format, chain VC [auth A] SDF format, chain VD [auth A] SDF format, chain VE [auth A] SDF format, chain WA [auth A] SDF format, chain WC [auth A] SDF format, chain WD [auth A] SDF format, chain WE [auth A] SDF format, chain XA [auth A] SDF format, chain XC [auth A] SDF format, chain XD [auth A] SDF format, chain XE [auth A] SDF format, chain Y [auth A] SDF format, chain YA [auth A] SDF format, chain YB [auth A] SDF format, chain Z [auth A] SDF format, chain ZA [auth A] SDF format, chain ZC [auth A] SDF format, chain ZD [auth A] SDF format, chain ZE [auth A] SDF format, chain AA [auth A] SDF format, chain AB [auth A] SDF format, chain AD [auth A] SDF format, chain BB [auth A] SDF format, chain BD [auth A] SDF format, chain CB [auth A] SDF format, chain DA [auth A] SDF format, chain ED [auth A] SDF format, chain FA [auth A] SDF format, chain FB [auth A] SDF format, chain FE [auth A] SDF format, chain HA [auth A] SDF format, chain IC [auth A] SDF format, chain ID [auth A] SDF format, chain JA [auth A] SDF format, chain LA [auth A] SDF format, chain LB [auth A] SDF format, chain LC [auth A] SDF format, chain MD [auth A] SDF format, chain NA [auth A] SDF format, chain ND [auth A] SDF format, chain NE [auth A] SDF format, chain PE [auth A] SDF format, chain QC [auth A] SDF format, chain RD [auth A] SDF format, chain SA [auth A] SDF format, chain SD [auth A] SDF format, chain SE [auth A] SDF format, chain TA [auth A] SDF format, chain TC [auth A] SDF format, chain UE [auth A] SDF format, chain VB [auth A] SDF format, chain WB [auth A] SDF format, chain XB [auth A] SDF format, chain YC [auth A] SDF format, chain YD [auth A] SDF format, chain YE [auth A] SDF format, chain ZB [auth A] MOL2 format, chain AC [auth A] MOL2 format, chain AE [auth A] MOL2 format, chain AF [auth A] MOL2 format, chain BA [auth A] MOL2 format, chain BC [auth A] MOL2 format, chain BE [auth A] MOL2 format, chain BF [auth A] MOL2 format, chain CA [auth A] MOL2 format, chain CC [auth A] MOL2 format, chain CD [auth A] MOL2 format, chain CE [auth A] MOL2 format, chain CF [auth A] MOL2 format, chain DB [auth A] MOL2 format, chain DC [auth A] MOL2 format, chain DD [auth A] MOL2 format, chain DE [auth A] MOL2 format, chain DF [auth M] MOL2 format, chain EA [auth A] MOL2 format, chain EB [auth A] MOL2 format, chain EC [auth A] MOL2 format, chain EE [auth A] MOL2 format, chain EF [auth O] MOL2 format, chain FC [auth A] MOL2 format, chain FD [auth A] MOL2 format, chain GA [auth A] MOL2 format, chain GB [auth A] MOL2 format, chain GC [auth A] MOL2 format, chain GD [auth A] MOL2 format, chain GE [auth A] MOL2 format, chain HB [auth A] MOL2 format, chain HC [auth A] MOL2 format, chain HD [auth A] MOL2 format, chain HE [auth A] MOL2 format, chain IA [auth A] MOL2 format, chain IB [auth A] MOL2 format, chain IE [auth A] MOL2 format, chain JB [auth A] MOL2 format, chain JC [auth A] MOL2 format, chain JD [auth A] MOL2 format, chain JE [auth A] MOL2 format, chain KA [auth A] MOL2 format, chain KB [auth A] MOL2 format, chain KC [auth A] MOL2 format, chain KD [auth A] MOL2 format, chain KE [auth A] MOL2 format, chain LD [auth A] MOL2 format, chain LE [auth A] MOL2 format, chain MA [auth A] MOL2 format, chain MB [auth A] MOL2 format, chain MC [auth A] MOL2 format, chain ME [auth A] MOL2 format, chain NB [auth A] MOL2 format, chain NC [auth A] MOL2 format, chain OA [auth A] MOL2 format, chain OB [auth A] MOL2 format, chain OC [auth A] MOL2 format, chain OD [auth A] MOL2 format, chain OE [auth A] MOL2 format, chain PA [auth A] MOL2 format, chain PB [auth A] MOL2 format, chain PC [auth A] MOL2 format, chain PD [auth A] MOL2 format, chain QA [auth A] MOL2 format, chain QB [auth A] MOL2 format, chain QD [auth A] MOL2 format, chain QE [auth A] MOL2 format, chain RA [auth A] MOL2 format, chain RB [auth A] MOL2 format, chain RC [auth A] MOL2 format, chain RE [auth A] MOL2 format, chain SB [auth A] MOL2 format, chain SC [auth A] MOL2 format, chain TB [auth A] MOL2 format, chain TD [auth A] MOL2 format, chain TE [auth A] MOL2 format, chain UA [auth A] MOL2 format, chain UB [auth A] MOL2 format, chain UC [auth A] MOL2 format, chain UD [auth A] MOL2 format, chain VA [auth A] MOL2 format, chain VC [auth A] MOL2 format, chain VD [auth A] MOL2 format, chain VE [auth A] MOL2 format, chain WA [auth A] MOL2 format, chain WC [auth A] MOL2 format, chain WD [auth A] MOL2 format, chain WE [auth A] MOL2 format, chain XA [auth A] MOL2 format, chain XC [auth A] MOL2 format, chain XD [auth A] MOL2 format, chain XE [auth A] MOL2 format, chain Y [auth A] MOL2 format, chain YA [auth A] MOL2 format, chain YB [auth A] MOL2 format, chain Z [auth A] MOL2 format, chain ZA [auth A] MOL2 format, chain ZC [auth A] MOL2 format, chain ZD [auth A] MOL2 format, chain ZE [auth A] MOL2 format, chain AA [auth A] MOL2 format, chain AB [auth A] MOL2 format, chain AD [auth A] MOL2 format, chain BB [auth A] MOL2 format, chain BD [auth A] MOL2 format, chain CB [auth A] MOL2 format, chain DA [auth A] MOL2 format, chain ED [auth A] MOL2 format, chain FA [auth A] MOL2 format, chain FB [auth A] MOL2 format, chain FE [auth A] MOL2 format, chain HA [auth A] MOL2 format, chain IC [auth A] MOL2 format, chain ID [auth A] MOL2 format, chain JA [auth A] MOL2 format, chain LA [auth A] MOL2 format, chain LB [auth A] MOL2 format, chain LC [auth A] MOL2 format, chain MD [auth A] MOL2 format, chain NA [auth A] MOL2 format, chain ND [auth A] MOL2 format, chain NE [auth A] MOL2 format, chain PE [auth A] MOL2 format, chain QC [auth A] MOL2 format, chain RD [auth A] MOL2 format, chain SA [auth A] MOL2 format, chain SD [auth A] MOL2 format, chain SE [auth A] MOL2 format, chain TA [auth A] MOL2 format, chain TC [auth A] MOL2 format, chain UE [auth A] MOL2 format, chain VB [auth A] MOL2 format, chain WB [auth A] MOL2 format, chain XB [auth A] MOL2 format, chain YC [auth A] MOL2 format, chain YD [auth A] MOL2 format, chain YE [auth A] MOL2 format, chain ZB [auth A] mmCIF format, chain AC [auth A] mmCIF format, chain AE [auth A] mmCIF format, chain AF [auth A] mmCIF format, chain BA [auth A] mmCIF format, chain BC [auth A] mmCIF format, chain BE [auth A] mmCIF format, chain BF [auth A] mmCIF format, chain CA [auth A] mmCIF format, chain CC [auth A] mmCIF format, chain CD [auth A] mmCIF format, chain CE [auth A] mmCIF format, chain CF [auth A] mmCIF format, chain DB [auth A] mmCIF format, chain DC [auth A] mmCIF format, chain DD [auth A] mmCIF format, chain DE [auth A] mmCIF format, chain DF [auth M] mmCIF format, chain EA [auth A] mmCIF format, chain EB [auth A] mmCIF format, chain EC [auth A] mmCIF format, chain EE [auth A] mmCIF format, chain EF [auth O] mmCIF format, chain FC [auth A] mmCIF format, chain FD [auth A] mmCIF format, chain GA [auth A] mmCIF format, chain GB [auth A] mmCIF format, chain GC [auth A] mmCIF format, chain GD [auth A] mmCIF format, chain GE [auth A] mmCIF format, chain HB [auth A] mmCIF format, chain HC [auth A] mmCIF format, chain HD [auth A] mmCIF format, chain HE [auth A] mmCIF format, chain IA [auth A] mmCIF format, chain IB [auth A] mmCIF format, chain IE [auth A] mmCIF format, chain JB [auth A] mmCIF format, chain JC [auth A] mmCIF format, chain JD [auth A] mmCIF format, chain JE [auth A] mmCIF format, chain KA [auth A] mmCIF format, chain KB [auth A] mmCIF format, chain KC [auth A] mmCIF format, chain KD [auth A] mmCIF format, chain KE [auth A] mmCIF format, chain LD [auth A] mmCIF format, chain LE [auth A] mmCIF format, chain MA [auth A] mmCIF format, chain MB [auth A] mmCIF format, chain MC [auth A] mmCIF format, chain ME [auth A] mmCIF format, chain NB [auth A] mmCIF format, chain NC [auth A] mmCIF format, chain OA [auth A] mmCIF format, chain OB [auth A] mmCIF format, chain OC [auth A] mmCIF format, chain OD [auth A] mmCIF format, chain OE [auth A] mmCIF format, chain PA [auth A] mmCIF format, chain PB [auth A] mmCIF format, chain PC [auth A] mmCIF format, chain PD [auth A] mmCIF format, chain QA [auth A] mmCIF format, chain QB [auth A] mmCIF format, chain QD [auth A] mmCIF format, chain QE [auth A] mmCIF format, chain RA [auth A] mmCIF format, chain RB [auth A] mmCIF format, chain RC [auth A] mmCIF format, chain RE [auth A] mmCIF format, chain SB [auth A] mmCIF format, chain SC [auth A] mmCIF format, chain TB [auth A] mmCIF format, chain TD [auth A] mmCIF format, chain TE [auth A] mmCIF format, chain UA [auth A] mmCIF format, chain UB [auth A] mmCIF format, chain UC [auth A] mmCIF format, chain UD [auth A] mmCIF format, chain VA [auth A] mmCIF format, chain VC [auth A] mmCIF format, chain VD [auth A] mmCIF format, chain VE [auth A] mmCIF format, chain WA [auth A] mmCIF format, chain WC [auth A] mmCIF format, chain WD [auth A] mmCIF format, chain WE [auth A] mmCIF format, chain XA [auth A] mmCIF format, chain XC [auth A] mmCIF format, chain XD [auth A] mmCIF format, chain XE [auth A] mmCIF format, chain Y [auth A] mmCIF format, chain YA [auth A] mmCIF format, chain YB [auth A] mmCIF format, chain Z [auth A] mmCIF format, chain ZA [auth A] mmCIF format, chain ZC [auth A] mmCIF format, chain ZD [auth A] mmCIF format, chain ZE [auth A] mmCIF format, chain AA [auth A] mmCIF format, chain AB [auth A] mmCIF format, chain AD [auth A] mmCIF format, chain BB [auth A] mmCIF format, chain BD [auth A] mmCIF format, chain CB [auth A] mmCIF format, chain DA [auth A] mmCIF format, chain ED [auth A] mmCIF format, chain FA [auth A] mmCIF format, chain FB [auth A] mmCIF format, chain FE [auth A] mmCIF format, chain HA [auth A] mmCIF format, chain IC [auth A] mmCIF format, chain ID [auth A] mmCIF format, chain JA [auth A] mmCIF format, chain LA [auth A] mmCIF format, chain LB [auth A] mmCIF format, chain LC [auth A] mmCIF format, chain MD [auth A] mmCIF format, chain NA [auth A] mmCIF format, chain ND [auth A] mmCIF format, chain NE [auth A] mmCIF format, chain PE [auth A] mmCIF format, chain QC [auth A] mmCIF format, chain RD [auth A] mmCIF format, chain SA [auth A] mmCIF format, chain SD [auth A] mmCIF format, chain SE [auth A] mmCIF format, chain TA [auth A] mmCIF format, chain TC [auth A] mmCIF format, chain UE [auth A] mmCIF format, chain VB [auth A] mmCIF format, chain WB [auth A] mmCIF format, chain XB [auth A] mmCIF format, chain YC [auth A] mmCIF format, chain YD [auth A] mmCIF format, chain YE [auth A] mmCIF format, chain ZB [auth A]	AA [auth A] AB [auth A] AC [auth A] AD [auth A] AE [auth A] AA [auth A], AB [auth A], AC [auth A], AD [auth A], AE [auth A], AF [auth A], BA [auth A], BB [auth A], BC [auth A], BD [auth A], BE [auth A], BF [auth A], CA [auth A], CB [auth A], CC [auth A], CD [auth A], CE [auth A], CF [auth A], DA [auth A], DB [auth A], DC [auth A], DD [auth A], DE [auth A], DF [auth M], EA [auth A], EB [auth A], EC [auth A], ED [auth A], EE [auth A], EF [auth O], FA [auth A], FB [auth A], FC [auth A], FD [auth A], FE [auth A], GA [auth A], GB [auth A], GC [auth A], GD [auth A], GE [auth A], HA [auth A], HB [auth A], HC [auth A], HD [auth A], HE [auth A], IA [auth A], IB [auth A], IC [auth A], ID [auth A], IE [auth A], JA [auth A], JB [auth A], JC [auth A], JD [auth A], JE [auth A], KA [auth A], KB [auth A], KC [auth A], KD [auth A], KE [auth A], LA [auth A], LB [auth A], LC [auth A], LD [auth A], LE [auth A], MA [auth A], MB [auth A], MC [auth A], MD [auth A], ME [auth A], NA [auth A], NB [auth A], NC [auth A], ND [auth A], NE [auth A], OA [auth A], OB [auth A], OC [auth A], OD [auth A], OE [auth A], PA [auth A], PB [auth A], PC [auth A], PD [auth A], PE [auth A], QA [auth A], QB [auth A], QC [auth A], QD [auth A], QE [auth A], RA [auth A], RB [auth A], RC [auth A], RD [auth A], RE [auth A], SA [auth A], SB [auth A], SC [auth A], SD [auth A], SE [auth A], TA [auth A], TB [auth A], TC [auth A], TD [auth A], TE [auth A], UA [auth A], UB [auth A], UC [auth A], UD [auth A], UE [auth A], VA [auth A], VB [auth A], VC [auth A], VD [auth A], VE [auth A], WA [auth A], WB [auth A], WC [auth A], WD [auth A], WE [auth A], XA [auth A], XB [auth A], XC [auth A], XD [auth A], XE [auth A], Y [auth A], YA [auth A], YB [auth A], YC [auth A], YD [auth A], YE [auth A], Z [auth A], ZA [auth A], ZB [auth A], ZC [auth A], ZD [auth A], ZE [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain AA [auth A] Focus chain AB [auth A] Focus chain AC [auth A] Focus chain AD [auth A] Focus chain AE [auth A] Focus chain AF [auth A] Focus chain BA [auth A] Focus chain BB [auth A] Focus chain BC [auth A] Focus chain BD [auth A] Focus chain BE [auth A] Focus chain BF [auth A] Focus chain CA [auth A] Focus chain CB [auth A] Focus chain CC [auth A] Focus chain CD [auth A] Focus chain CE [auth A] Focus chain CF [auth A] Focus chain DA [auth A] Focus chain DB [auth A] Focus chain DC [auth A] Focus chain DD [auth A] Focus chain DE [auth A] Focus chain DF [auth M] Focus chain EA [auth A] Focus chain EB [auth A] Focus chain EC [auth A] Focus chain ED [auth A] Focus chain EE [auth A] Focus chain EF [auth O] Focus chain FA [auth A] Focus chain FB [auth A] Focus chain FC [auth A] Focus chain FD [auth A] Focus chain FE [auth A] Focus chain GA [auth A] Focus chain GB [auth A] Focus chain GC [auth A] Focus chain GD [auth A] Focus chain GE [auth A] Focus chain HA [auth A] Focus chain HB [auth A] Focus chain HC [auth A] Focus chain HD [auth A] Focus chain HE [auth A] Focus chain IA [auth A] Focus chain IB [auth A] Focus chain IC [auth A] Focus chain ID [auth A] Focus chain IE [auth A] Focus chain JA [auth A] Focus chain JB [auth A] Focus chain JC [auth A] Focus chain JD [auth A] Focus chain JE [auth A] Focus chain KA [auth A] Focus chain KB [auth A] Focus chain KC [auth A] Focus chain KD [auth A] Focus chain KE [auth A] Focus chain LA [auth A] Focus chain LB [auth A] Focus chain LC [auth A] Focus chain LD [auth A] Focus chain LE [auth A] Focus chain MA [auth A] Focus chain MB [auth A] Focus chain MC [auth A] Focus chain MD [auth A] Focus chain ME [auth A] Focus chain NA [auth A] Focus chain NB [auth A] Focus chain NC [auth A] Focus chain ND [auth A] Focus chain NE [auth A] Focus chain OA [auth A] Focus chain OB [auth A] Focus chain OC [auth A] Focus chain OD [auth A] Focus chain OE [auth A] Focus chain PA [auth A] Focus chain PB [auth A] Focus chain PC [auth A] Focus chain PD [auth A] Focus chain PE [auth A] Focus chain QA [auth A] Focus chain QB [auth A] Focus chain QC [auth A] Focus chain QD [auth A] Focus chain QE [auth A] Focus chain RA [auth A] Focus chain RB [auth A] Focus chain RC [auth A] Focus chain RD [auth A] Focus chain RE [auth A] Focus chain SA [auth A] Focus chain SB [auth A] Focus chain SC [auth A] Focus chain SD [auth A] Focus chain SE [auth A] Focus chain TA [auth A] Focus chain TB [auth A] Focus chain TC [auth A] Focus chain TD [auth A] Focus chain TE [auth A] Focus chain UA [auth A] Focus chain UB [auth A] Focus chain UC [auth A] Focus chain UD [auth A] Focus chain UE [auth A] Focus chain VA [auth A] Focus chain VB [auth A] Focus chain VC [auth A] Focus chain VD [auth A] Focus chain VE [auth A] Focus chain WA [auth A] Focus chain WB [auth A] Focus chain WC [auth A] Focus chain WD [auth A] Focus chain WE [auth A] Focus chain XA [auth A] Focus chain XB [auth A] Focus chain XC [auth A] Focus chain XD [auth A] Focus chain XE [auth A] Focus chain Y [auth A] Focus chain YA [auth A] Focus chain YB [auth A] Focus chain YC [auth A] Focus chain YD [auth A] Focus chain YE [auth A] Focus chain Z [auth A] Focus chain ZA [auth A] Focus chain ZB [auth A] Focus chain ZC [auth A] Focus chain ZD [auth A] Focus chain ZE [auth A] Interactions & Density Focus chain AA [auth A] Focus chain AB [auth A] Focus chain AC [auth A] Focus chain AD [auth A] Focus chain AE [auth A] Focus chain AF [auth A] Focus chain BA [auth A] Focus chain BB [auth A] Focus chain BC [auth A] Focus chain BD [auth A] Focus chain BE [auth A] Focus chain BF [auth A] Focus chain CA [auth A] Focus chain CB [auth A] Focus chain CC [auth A] Focus chain CD [auth A] Focus chain CE [auth A] Focus chain CF [auth A] Focus chain DA [auth A] Focus chain DB [auth A] Focus chain DC [auth A] Focus chain DD [auth A] Focus chain DE [auth A] Focus chain DF [auth M] Focus chain EA [auth A] Focus chain EB [auth A] Focus chain EC [auth A] Focus chain ED [auth A] Focus chain EE [auth A] Focus chain EF [auth O] Focus chain FA [auth A] Focus chain FB [auth A] Focus chain FC [auth A] Focus chain FD [auth A] Focus chain FE [auth A] Focus chain GA [auth A] Focus chain GB [auth A] Focus chain GC [auth A] Focus chain GD [auth A] Focus chain GE [auth A] Focus chain HA [auth A] Focus chain HB [auth A] Focus chain HC [auth A] Focus chain HD [auth A] Focus chain HE [auth A] Focus chain IA [auth A] Focus chain IB [auth A] Focus chain IC [auth A] Focus chain ID [auth A] Focus chain IE [auth A] Focus chain JA [auth A] Focus chain JB [auth A] Focus chain JC [auth A] Focus chain JD [auth A] Focus chain JE [auth A] Focus chain KA [auth A] Focus chain KB [auth A] Focus chain KC [auth A] Focus chain KD [auth A] Focus chain KE [auth A] Focus chain LA [auth A] Focus chain LB [auth A] Focus chain LC [auth A] Focus chain LD [auth A] Focus chain LE [auth A] Focus chain MA [auth A] Focus chain MB [auth A] Focus chain MC [auth A] Focus chain MD [auth A] Focus chain ME [auth A] Focus chain NA [auth A] Focus chain NB [auth A] Focus chain NC [auth A] Focus chain ND [auth A] Focus chain NE [auth A] Focus chain OA [auth A] Focus chain OB [auth A] Focus chain OC [auth A] Focus chain OD [auth A] Focus chain OE [auth A] Focus chain PA [auth A] Focus chain PB [auth A] Focus chain PC [auth A] Focus chain PD [auth A] Focus chain PE [auth A] Focus chain QA [auth A] Focus chain QB [auth A] Focus chain QC [auth A] Focus chain QD [auth A] Focus chain QE [auth A] Focus chain RA [auth A] Focus chain RB [auth A] Focus chain RC [auth A] Focus chain RD [auth A] Focus chain RE [auth A] Focus chain SA [auth A] Focus chain SB [auth A] Focus chain SC [auth A] Focus chain SD [auth A] Focus chain SE [auth A] Focus chain TA [auth A] Focus chain TB [auth A] Focus chain TC [auth A] Focus chain TD [auth A] Focus chain TE [auth A] Focus chain UA [auth A] Focus chain UB [auth A] Focus chain UC [auth A] Focus chain UD [auth A] Focus chain UE [auth A] Focus chain VA [auth A] Focus chain VB [auth A] Focus chain VC [auth A] Focus chain VD [auth A] Focus chain VE [auth A] Focus chain WA [auth A] Focus chain WB [auth A] Focus chain WC [auth A] Focus chain WD [auth A] Focus chain WE [auth A] Focus chain XA [auth A] Focus chain XB [auth A] Focus chain XC [auth A] Focus chain XD [auth A] Focus chain XE [auth A] Focus chain Y [auth A] Focus chain YA [auth A] Focus chain YB [auth A] Focus chain YC [auth A] Focus chain YD [auth A] Focus chain YE [auth A] Focus chain Z [auth A] Focus chain ZA [auth A] Focus chain ZB [auth A] Focus chain ZC [auth A] Focus chain ZD [auth A] Focus chain ZE [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
D2T Query on D2T	M	L-PEPTIDE LINKING	C₅ H₉ N O₄ S		ASP

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-20

Deposition Author(s):

Rahil, H.

Weixlbaumer, A.

Webster, M.W.

Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	679734
Agence Nationale de la Recherche (ANR)	France	ANR-10-LABX-0030-INRT
Agence Nationale de la Recherche (ANR)	France	ANR-10-IDEX-0002-02
European Molecular Biology Organization (EMBO)	European Union	--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35GM131922
Wellcome Trust	United Kingdom	203149

Revision History (Full details and data files)

Version 1.0: 2024-11-20
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

9GUT

30S mRNA delivery complex (bS1 resolved)

Molecular basis of mRNA delivery to the bacterial ribosome

Entity ID: 2

UniProt

Entity Groups

Sequence Annotations

Entity ID: 3

UniProt

Entity Groups

Sequence Annotations

Entity ID: 4

UniProt

Entity Groups

Sequence Annotations

Entity ID: 5

UniProt

Entity Groups

Sequence Annotations

Entity ID: 6

UniProt

Entity Groups

Sequence Annotations

Entity ID: 7

UniProt

Entity Groups

Sequence Annotations

Entity ID: 8

UniProt

Entity Groups

Sequence Annotations

Entity ID: 9

UniProt

Entity Groups

Sequence Annotations

Entity ID: 10

UniProt

Entity Groups

Sequence Annotations

Entity ID: 11

UniProt

Entity Groups

Sequence Annotations

Entity ID: 12

UniProt

Entity Groups

Sequence Annotations

Entity ID: 13

UniProt

Entity Groups

Sequence Annotations

Entity ID: 14

UniProt

Entity Groups

Sequence Annotations

Entity ID: 15

UniProt

Entity Groups

Sequence Annotations

Entity ID: 16

UniProt

Entity Groups

Sequence Annotations

Entity ID: 17

UniProt

Entity Groups

Sequence Annotations

Entity ID: 18

UniProt

Entity Groups

Sequence Annotations

Entity ID: 19

UniProt

Entity Groups

Sequence Annotations

Entity ID: 20